Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF4

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

sample_type
cell line
sex
male
dev stage
child
age
15 year
donor ID
ENCDO000AAC
lab
Michael Snyder, Stanford
source
Michael Snyder
health state
hepatocellular carcinoma
cell line
HepG2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
57483126
Reads aligned (%)
97.0
Duplicates removed (%)
16.9
Number of peaks
1936 (qval < 1E-05)

hg19

Number of total reads
57483126
Reads aligned (%)
96.2
Duplicates removed (%)
17.3
Number of peaks
936 (qval < 1E-05)

Base call quality data from DBCLS SRA